Here is a list of software packages and web pages develped by me.
- LRcell (Differential cell type change analysis using Logitstic/linear Regression): LRcell is developed to identify specific (sub-)cell types that drives the changes observed in a bulk RNA-seq differential gene expression experiment.
- BARTweb(Binding Analysis for Regulation of Transcription web): A web server hosted for performing BART analysis, which is a bioinformatics tool for predicting functional factors (including transcription factors and chromatin regulators) that bind at cis-regulatory regions to regulate gene expression in human or mouse, taking a query gene list or a ChIP-seq dataset as input.
- Explorations on strategies of constructing reference dataset for celltyping. Our paper is currently under review and once it gets published, I will put the code link here. project link