Publications

(*: equal distribution)

Published papers

• Wenjing Ma, Jiaying Lu, Hao Wu. Cellcano: supervised cell type identification for single cell ATAC-seq data. Nature Communications (In press), (2022). DOI, Cellcano package
  • Poster won 3rd place (out of 47) at Georgia Statistics day, Atlanta, GA, U.S. Oct 2022.
  • 2023 ASA Section on Statistics in Genomics and Genetics (SGG) Student Paper Award, SSGG Interview (Page 9)
  • Won First Place in MCBIOS 2023 Young Scientist Excellence Award (YSEA) for Graduate Student Certificate
• Shengen Shawn Hu, Lin Liu, Qi Li, Wenjng Ma, Michael J. Guertin, Clifford A. Meyer, Ke Deng, Tingting Zhang, Chongzhi Zang. Intrinsic bias estimation for improved analysis of bulk and single-cell chromatin accessibility profiles using SELMA. Nature Communications, (2022). DOI, package
• Wenjing Ma, Sumeet Sharma, Peng Jin, Shannon L. Gourley, Zhaohui Qin. LRcell: detecting the source of differential expression at the sub-cell type level from bulk RNA-seq data. Briefings in Bioinformatics, (2022). DOI, R package
  • Talk at AWSOM workshop, Atlanta, GA, U.S. Apr 2022. Agenda
• Wenjing Ma, Kenong Su, Hao Wu. Evaluation of some aspects in supervised cell type identification for single-cell RNA-seq: classifier, feature selection, and reference construction. Genome Biology, (2021). DOI, project
  • Poster won Honorable Mention at Georgia Statistics day, Atlanta, GA, U.S. Oct 2021.
  • Won Best 5-minutes presentation award at 2nd Annual Workshop, Emerging Data Science Methods for Complex Biomedical and Cyber Data, Augusta, GA, U.S. Oct 2021.
• Wenjing Ma*, Zhenjia Wang*, Yifan Zhang, Neal E. Magee, Yayi Feng, Ruoyao Shi, Yang Chen, Chongzhi Zang. BARTweb: a web server for transcriptional regulator association analysis. NAR Genomics and Bioinformatics, (2021). DOI, BARTweb
  • Poster at Research in Computational Molecular Biology (RECOMB), Washington, D.C., U.S. May 2019.

Collaboration papers

• Yulin Jin, Kenong Su, Ha Eun Kong, Wenjing Ma, Zhiqin Wang, Yujing Li, Ronghua Li, Emily Allen, Hao Wu, Peng Jin. Cell-type specific DNA methylome signatures reveal epigenetic mechanisms for neuronal diversity and neurodevelopmental disorder. Human Molecular Genetics, (2022). DOI

Under Review

• Sumeet Sharma*, Wenjing Ma*, Kerry J. Ressler, Thea Anderson, Dan. C. Li, Peng Jin, Shannon L. Gourley, Zhaohui Qin. Dysregulation of prefrontal oligodendrocyte linage cells across mouse models of adversity and human major depressive disorder. Under revision, (2021).

Posters

• BARTweb @ RECOMB 2019

  

• Benchmark scRNA-seq celltyping @ GSD 2021

  

• Cellcano @ GSD 2022